BTC-e gave out a statement on Bitcointalk.org about their recent incident involving the arrested Russian national for laundering $4M worth of Bitcoins in the last couple of years.
Apparently, they claim that the suspect, Alexander Vinnik - who is also the suspect to have pulled off the MtGox - is not in any way part of BTC-e.
Furthermore, BTC-e promised to return whatever money they have left - minus the funds seized by the FBI (through the confiscated servers, I suppose).
Here's one of their statements that echoed the most.
To get the full details of the announcement, along with the 39 pages (and counting) of responses, go check out the thread here.