There is no harm in that whatsoever, in fact, if you're uncertain, it may be best to delete all your keypairs, generate a new one and map that one. You'll thank yourself in a year.
RE: How to update the EOS public key mapped/registered to your ETH Address with MyEtherWallet (MEW)
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How to update the EOS public key mapped/registered to your ETH Address with MyEtherWallet (MEW)