It's possible they were doing excessive redundancy checks to verify the integrity of each packet, which hypothetically could double or triple transfer time. Then they may have had to keep it throttled back to save bandwidth for all other needs. This is probably the big one here.
RE: Results from Uncovering the Genome Mystery Project, The Story of Life in 30 TB
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Results from Uncovering the Genome Mystery Project, The Story of Life in 30 TB