The name of Raja Ampat comes from local mythology that tells of a woman who finds seven eggs. Four of the seven hatch and become kings who occupy four of Raja Ampat biggest islands whilst the other three become a ghost, a woman, and a stone.
History shows that Raja Ampat was once a part of Sultanate of Tidore, an influential kingdom from Maluku. Yet, after the Dutch invaded Maluku, it was claimed by the Netherlands.
The first recorded sighting and landing by Europeans of the Ampat Islands was by the Portuguese navigator Jorge de Menezes and his crew in 1526, en route from Biak, the Bird's Head Peninsula, and Waigeo, to Halmahera (Ternate).
The English explorer William Dampier gave his name to Dampier Strait, which separates Batanta island from Waigeo island. To the east, there is a strait that separates Batanta from Salawati. In 1759 Captain William Wilson sailing in the East Indiaman Pitt navigated these waters and named a strait the 'Pitt strait', after his vessel; this was probably the channel between Batanta and Salawati.